{"id":24642,"date":"2023-01-06T08:30:00","date_gmt":"2023-01-06T08:30:00","guid":{"rendered":"https:\/\/rottjers-consulting.nl\/?page_id=24642"},"modified":"2023-01-06T08:30:00","modified_gmt":"2023-01-06T08:30:00","slug":"publicaties","status":"publish","type":"page","link":"https:\/\/rottjers-consulting.nl\/en\/publicaties\/","title":{"rendered":"Publicaties"},"content":{"rendered":"

Fast and flexible analysis of linked microbiome data with mako<\/strong><\/a>
\n<\/h4>\n
Sam R\u00f6ttjers and Karoline Faust<\/h6>\n

In this paper I introduce a framework written in Python to easily integrate microbiome data in Neo4j databases.<\/p>\n\t

Null-model-based network comparison reveals core associations<\/a><\/strong><\/h4>\n
Sam R\u00f6ttjers, Doris Vandeputte, Jeroen Raes and Karoline Faust<\/h6>\n

Here, I present an application developed in Python to compare multiple microbiological networks from different datasets. The application can be used to assess whether networks look more or less similar than we would expect.<\/p>\n\t

Earth microbial co-occurrence network reveals interconnection pattern across microbiomes<\/a><\/h4>\n
Bin Ma, Yiling Wang, Shudi Ye, Shan Liu, Erinne Stirling, Jack A. Gilbert, Karoline Faust, Rob Knight, Janet K. Jansson, Cesar Cardona, Sam R\u00f6ttjers en Jianming Xu<\/h6>\n

This paper describes the structure of worldwide microbial networks. I mainly provided feedback on the methodology used in the paper.<\/p>\n\t

manta – a clustering algorithm for weighted ecological networks<\/a><\/h4>\n
Sam R\u00f6ttjers and Karoline Faust<\/h6>\n

Here, I describe an algorithm that I wrote to cluster microbial networks. I also evaluate the accuracy of other algorithms on computer-generated data.<\/p>\n\t

From hairballs to hypotheses – biological insights from microbial networks<\/a><\/h4>\n
Sam R\u00f6ttjers and Karoline Faust<\/h6>\n

This paper is an in-depth review on microbial networks. It describes the methodology and its pitfalls.<\/p>","protected":false},"excerpt":{"rendered":"

Fast and flexible analysis of linked microbiome data with mako Sam R\u00f6ttjers en Karoline Faust In dit artikel introduceer ik een framework geschreven in Python om makkelijk microbiologische data te integreren in Neo4j databases. Null-model-based network comparison reveals core associations Sam R\u00f6ttjers, Doris Vandeputte, Jeroen Raes en Karoline Faust Hier presenteer ik een applicatie ontwikkeld […]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"om_disable_all_campaigns":false,"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"site-sidebar-layout":"default","site-content-layout":"","ast-site-content-layout":"default","site-content-style":"default","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"","footer-sml-layout":"","ast-disable-related-posts":"","theme-transparent-header-meta":"","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"default","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"ast-content-background-meta":{"desktop":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"footnotes":""},"class_list":["post-24642","page","type-page","status-publish","hentry"],"aioseo_notices":[],"aioseo_head":"\n\t\t\n\t\n\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\t